Fish distribution and tidal currents in the Upper San Francisco Estuary, 2022-2023 (ver. 2.0, March 2024)

This data release includes field data for fishes sampled through mid-water trawls and otter trawl methods from Suisun Bay, California to the mouth of the Sacramento River. These data were collected from the months of September through October in 2022 and 2023 as a part of a multi-year study of Suisun Dredging and Fish Distribution (SDFD). This data release includes quantitative data on collected fish taxa focused on habitat differences between shipping channels and shoals. Sampling was done using short duration (~15 minute) trawls alongside associated water quality sample and Acoustic Doppler Current Profiler (ADCP) data collected at variable locations, depths, times, and currents. First release: May 26,2023 Revised:...

Categories: Data; Tags: California, New York Slough, Sacramento-San Joaquin Delta, Suisun Bay, USGS Science Data Catalog (SDC), All tags... United States, aquatic biology, biota, biota, datasets, ecology, environment, estuarine ecosystems, ichthyology, transect sampling, water quality, wetlands, Fewer tags

Microsatellite genotypes for Lake Sturgeon (Acipenser fulvescens) Eggs and Larvae from Constructed Reefs in the St. Clair-Detroit River System (2015-2016)

This dataset contains the physical collection information (e.g., sample location, date, gear type) and microsatellite DNA genotype of egg and larval Lake Sturgeon collected in the St. Clair and Detroit rivers in 2015 and 2016. Individuals were genotyped for 18 microsatellite loci (13 disomic and 5 polysomic). Alleles (base pair sizes) were recorded as presence absence scores (1:present, 2:absent, 0:missing data) for all previously observed alleles. Thus individual genotypes were recorded as pseudo diploid dominant phenotypes resulting in individual vectors of length n=205 for each genotyped egg or larval individual.

Categories: Data; Tags: Acipenser, Acipenser fulvescens, Acipenseridae, Anthropogenic, Anthropogenic Rock, All tags... Anthropogenic Rock Reef Substrate, Anthropogenic Rock Rubble, Anthropogenic Substrate, Aquatic Biology, Aquatic Setting, Artificial reef, Assessments, Biological Occurrence, Data Content Subjects, Data Content Types, Detroit, Detroit River, Dredge Deposit, Dredge Disturbance, Dredged/Excavated Channel, Fishes, Fishing from Shore, Fishing with Benthic Mobile Gear, Genetics, Grassy Island, Great Lakes, Habitat, Harvesting Living Resources, Huron, Lacustrine, Lake Saint Clair, Lake St. Clair, Living Resources, Macomb, Michigan, Middle Channel Saint Clair River, Motorized Boating, North Channel Saint Clair River, Pelagic Fishing, Port Huron, Recreational Nonextractive /Cultural Use, Sailing, Saint Clair, Saint Clair River, Shipping, Shore Use, St. Clair, St. Clair-Detroit, Substrate, Transportation, USGS Science Data Catalog (SDC), United States, Wayne, Western Lake Erie, animals, anthropogenic agents of coastal change, aquatic ecosystems, biological features, biological laboratory methods, biological observations, biological resources, biology, biota, biota, canal, capturing (animals), channels, chordates, conservation, construction, cultural resources, data processing, datasets, discipline, dredge spoils disposal, dredging operations, ecological change, ecosystem monitoring, ecosystem restoration, ecosystems, endemic species, environment, environmental assessment, eukaryotes, feature type, field inventory and monitoring, field methods, field observation, field sampling, fish, fish eggs, fish larvae, fisheries, fishery resources, food resources, freshwater ecosystems, genetic diversity, genetics, genotype, habitats, hot topics, hydrographic features, ichthyology, ichthyoplankton, inland fishery resources, inlandWaters, laboratory methods, landform, life sciences, management methods, methods, native species, natural resources, nekton and plankton, organism groupings (non-taxonomic), organisms, physiographic features, population and community ecology, population dynamics, product types, ray-finned fish ["bony fish"], recreational fishery resources, reef, reefs, regions, research method, resource management, resources, river, river basin development, river systems, rivers, sciences, shipping channels, species conservation, streams, sturgeon, topics, transportation resources, trapping, vertebrates, water resources, wetland destruction, zoology, Fewer tags

Black carp and grass carp morphometric measurements

Black carp Mylopharyngodon piceus and grass carp Ctenopharyngodon idella are morphologically similar species imported from eastern Asia to North America as biological control organisms. Preferred identification methods are coloration and pharyngeal tooth form. Grass carp possess serrated teeth and black carp molariform teeth. Examination of pharyngeal teeth causes extensive damage to a specimen, and is labor and time intensive. Coloration can vary within a species and fades with preservation. We present a suite of external characteristics consisting of a truss network canonical variate analysis of distance measurements among landmarks on the lateral view of the head of each fish, the ratio of head length to mouth...

Tags: Asian Carp, Atchafalaya River, Black carp, Grass carp, Great Lakes, All tags... Ichthyology, Illinois River, Kaskaskia River, Mississippi River, Missouri, Morphometric, Ohio River, USGS Science Data Catalog (SDC), biota, Fewer tags

Attribution of benthic macroinvertebrate and fish sampling data to NHDPlusV2 Catchments within the Chesapeake Bay Watershed (ver. 2.0, March 2022)

This data release links fish survey data from a suite of programs in the Chesapeake Bay watershed as well the benthic macroinvertebrate sites included in the Chesapeake Bay Basin-wide Index of Biotic Integrity (Chessie BIBI) developed by the Interstate Commission on the Potomac River Basin (ICPRB) and available from the Chesapeake Bay Program (https://datahub.chesapeakebay.net/LivingResources). The data set contains site name, survey program, coordinates of sample, and ancillary information such as sample date and site location information where available. It also includes the NHDPlus V2.1 unique identifier, COMID, as well as a confidence classification category for each of these assignments based on a set of pre-determined...

Categories: Data; Tags: Aquatic Biology, District of Columbia (national district), Ecology, Hydrology, Maryland (state), All tags... New York (state), Pennsylvania (state), USGS Science Data Catalog (SDC), Virginia (state), West Virginia (state), aquatic biology, ecology, entomology, freshwater ecosystems, hydrology, ichthyology, Fewer tags

Simulated growth potential of redband trout in the Donner und Blitzen River Basin, southeastern Oregon, using a bioenergetics model

Growth potential of redband trout (Oncorhynchus mykiss newberri) was simulated across 175 river segments in the Donner und Blitzen River basin for water years 1980 through 2021 using a bioenergetics model. A previously published framework for assessing climate vulnerability of redband trout was used to simulate the growth potential of redband trout in relation to constraints on body size, physiological responses linked to variable thermal regimes, and variation in physiological adaptive capacity. For body size, three starting sizes of redband trout, 10 g, 50 g, and 150 g, were used for each day of the simulations. For thermal regimes, daily stream temperatures were estimated from PRISM. To account for variation...

Categories: Data; Tags: Ankle Creek (GNIS ID: 1116958, Stream), Aquatic Biology, Donner und Blitzen River (GNIS ID: 1120027, Stream), Ecology, Fish Creek (GNIS ID: 1120761, Stream), All tags... Frenchglen (GNIS ID: 1136302, Populated Place), Indian Creek (GNIS ID: 1122212, Stream), Indian Spring Creek (GNIS ID: 1129761, Stream), Little Blitzen River (GNIS ID: 1123136, Stream), Mud Creek (GNIS ID: 1124445, Stream), Steens Mountain (GNIS ID: 1127571, Summit), USGS Science Data Catalog (SDC), Wildlife Biology, bioenergetics, biota, environment, ichthyology, mathematical modeling, Fewer tags

Community metrics from inter-agency compilation of inland fish sampling data within the Chesapeake Bay Watershed

This data release contains calculated metrics which summarize various biodiversity and functional/life history trait information about fish communities sampled across the Chesapeake Bay Watershed as well as ancillary data related to time/place of sampling and sampling methodology. The fish sampling data used to compute these metrics were compiled from various fish sampling programs conducted by state and federal agencies, county governments, universities, and river basin commissions across the watershed. Prior to computation of community metrics data from individual fish sampling programs were investigated for completeness and data entry errors. Subsequently, desired fields were extracted from each individual dataset...

Categories: Data; Tags: Aquatic Biology, District of Columbia (national district), Ecology, Ecology, Maryland (state), All tags... New York (state), Pennsylvania (state), USGS Science Data Catalog (SDC), Virginia (state), Water Resources, Water Resources, West Virginia (state), aquatic biology, community ecology, ecology, fish, freshwater ecosystems, ichthyology, Fewer tags

Santa Ana River Native Fish Population and Habitat Data, Santa Ana River, California, 2022

This dataset includes 2022 reach fish data and reach habitat data collected to support development of the upper Santa Ana River Habitat Conservation Plan for the Santa Ana Sucker (Catostomus santaanae) and the Arroyo Chub (Gila orcutti) in the Santa Ana River, California.

Categories: Data; Tags: Aquatic Biology, Arroyo Chub (Gila orcutti), Ecology, Santa Ana River, Santa Ana Sucker (Catostomus santaanae), All tags... USGS Science Data Catalog (SDC), Wildlife Biology, biota, habitat use, ichthyology, population estimate, Fewer tags

Attribution of fish sampling data to NHDPlus HR catchments within the Chesapeake Bay Watershed

This data release links fish survey data from a suite of programs in the Chesapeake Bay watershed to the NHDPlus High Resolution Region 02 networks, hereafter referred to as NHDPlusHR. The data set contains site name, survey program, coordinates of sample, ancillary information such as sample date and site location information where available, and HR Permanent Identifier. It also includes a confidence classification category for each of NHD assignment based on a set of pre-determined rules. In total there were 15 confidence categories ranging from high confidence to low confidence. We caution the use of sampling points which were given anything other than "high" confidence in their assignment to a given NHD catchment/flowline...

Categories: Data; Tags: Aquatic Biology, District of Columbia (national district), Ecology, Hydrology, Maryland (state), All tags... New York (state), Pennsylvania (state), USGS Science Data Catalog (SDC), Virginia (state), West Virginia (state), aquatic biology, aquatic ecosystems, biota, ecology, freshwater ecosystems, hydrology, ichthyology, Fewer tags