Filters: Tags: genetic divergence (X)
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This dataset contains the reference genome assembly, created from 23 Hawaiian hoary bats collected across the four Hawaiian Islands, Hawaii, Maui, Oahu, and Kauai. These data were collected in order to examine the phylogenetic history and patterns of genetic variation in the Hawaiian hoary bat. The raw sequencing data are deposited to National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under accession PRJNA559902. The data are archived in GenBank at the following URL: https://www.ncbi.nlm.nih.gov/bioproject/559902. The data are stored in two files, one in a text-based FASTA format (HHB genome 2009-2015.fa) and the other in general feature format (HHB genome features 2009-2015.gff), both...
This dataset contains single nucleotide polymorphisim (SNP) genotypes for 23 Hawaiian hoary bats collected across four Hawaiian Islands, Hawaii, Maui, Oahu, and Kauai. The data were collected in order to examine the phylogenetic history and patterns of genetic variation in the Hawaiian hoary bat. The raw sequencing data are deposited to National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under accession PRJNA559902. The data are archived in GenBank at the following URL: https://www.ncbi.nlm.nih.gov/bioproject/559902. Note to users: ordinary text editors cannot open large files, users are advised to utilize a specialized text editor (e.g., EmEditor) or genetic bioinformatic-type software...
Data used to generate figure 2 A for the cited paper. Sequence divergence was calculated as DA, Neiâs net number of nucleotide differences between each pair of collection locations, where the average number of differences between individuals among locations is corrected for the average number of differences within each location [61]. For datasets where multiple loci were sequenced, pairwise distances were averaged across loci after normalization.
This dataset features tissue collection information, reference genome assembly, and single nucleotide polymorphisim (SNP) genotypes of 23 Hawaiian hoary bats collected across four Hawaiian Islands, Hawaii, Maui, Oahu, and Kauai. These data were collected in order to examine the phylogenetic history and patterns of genetic variation in the Hawaiian hoary bat. The raw sequencing data are deposited to National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under accession PRJNA559902. The data are archived in GenBank at the following URL: https://www.ncbi.nlm.nih.gov/bioproject/559902.
Data used to generate Figure 2C in the cited paper. Gene diversity landscapes for 13 species across the Mojave Desert. Gene diversity focuses on the number of gene copies, but does not contain information on the relative divergence of gene copies. Gene diversity (heterozygosity) was averaged across 13 species (A. punctatus, C. occipitalis, C. penicillatus, G. agassizii, H. selenopoides, H. theologus, L. trivirgata, O. canadensis, P. longimembris, P. gilberti, S. magister, U. scoparia, X. vigilis, and X. mohavensis). Sceloporus magister was excluded because most sampling locations contained less than three individuals. The gene diversity average genetic landscape covered 71,468 km2 when clipped to the extent of...
Data used to generate figure 2B from the cited paper. Sequence diversity (?) was averaged across 14 species (A. punctatus, C. occipitalis, C. penicillatus, G. agassizii, H. selenopoides, H. theologus, L. trivirgata, O. canadensis, P. longimembris, P. gilberti, S. magister, U. scoparia, X. vigilis, and X. mohavensis). The remaining three species in our dataset (C. bicinctores, D. dorsalis, and T. bottae) were excluded from diversity analyses because only single individuals were sampled at disparate locations that could not be combined. The average sequence diversity landscape covered 87,982 km2 when clipped to include three or more species (Figure 2B).
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