Filters: Tags: admixture (X)
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These data consist of microsatellite genotype scores for all samples of Santa Ana sucker (Catostomus santaanae) used in the study. Scores represent the allele calls for each microsatellite locus (i.e. DNA fragment length containing the microsatellite repeats), with each locus containing two scores representing the two allele copies detected. Included are five tables: Full dataset (includes genotypes from all samples), Santa Clara River samples only (includes genotypes only from samples collected in the Santa Clara River), Convert File format key (explains the data file format), Population identifiers (translates the numerical population identifiers to actual collecting sites), CASA sampling points (one coordinate...
Microsatellite data formatted for the software CONVERT, which includes dataset numerical IDs, sampling site names, and locus identifiers. Rows 291-294 provides information about the allele size ranges and repeat motif for each locus. Missing data are coded as ?.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau,
Microsatellite STRUCTURE input file that corresponds with the samples in the ‘refSampleLoc’ worksheet. Missing data are coded as -999.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau,
Location information regarding samples taken for each individual.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau,
The recency of large-scale land conversion in California’s San Joaquin Desert raises the probability that the region’s numerous endemic species still retain genetic signatures of historical population connectivity. If so, genomic data can serve as a guidance tool for conserving lands that once supported habitat for gene movement. We studied the genetic structuring of the endangered blunt-nosed leopard lizard Gambelia sila, a San Joaquin Desert endemic, to (1) test whether patterns of population admixture could be used to delimit former habitat corridors in the pre-converted landscape, (2) evaluate whether restriction site associated DNA sequencing (RADseq) from a subset of samples can resolve structure at the same...
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau,
Location information regarding samples taken for each individual.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau,
Location information regarding samples taken for each individual. This data sheet is to be used in conjunction with the 'Convert' file.
Categories: Data;
Types: Citation;
Tags: California,
Carrizo Plain,
Cuyama River Watershed,
Gambelia sila,
Panoche Plateau,
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