Filters: Tags: San Francisco Estuary and Watershed Science (X)
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A one-dimensional numerical model that simulates the effects of whitecapping waves was used to investigate the importance of whitecapping waves to vertical mixing at a 3-meter-deep site in Franks Tract in the Sacramento-San Joaquin Delta over an 11-day period. Locally-generated waves of mean period approximately 2 s were generated under strong wind conditions; significant wave heights ranged from 0 to 0.3 m. A surface turbulent kinetic energy flux was used to model whitecapping waves during periods when wind speeds > 5 m s-1 (62% of observations). The surface was modeled as a wind stress log-layer for the remaining 38% of the observations. The model results demonstrated that under moderate wind conditions (5–8 m...
The San Francisco Bay estuary is highly urbanized, but it supports the largest remaining extent of tidal salt marshes on the west coast of North America as well as a diverse native bird community. San Francisco Bay tidal marshes are occupied by more than 113 bird species that represent 31 families, including five subspecies from three families that we denote as tidal-marsh obligates. To better identify the niche of bird species in tidal marshes, we present a review of functional groups based on foraging guilds and habitat associations. Foraging guilds describe the method by which species obtain food from tidal marshes, while habitat associations describe broad areas within the marsh that have similar environmental...
Anthropogenic climate change amounts to a rapidly approaching, “new” stressor in the Sacramento–San Joaquin Delta system. In response to California’s extreme natural hydroclimatic variability, complex water-management systems have been developed, even as the Delta’s natural ecosystems have been largely devastated. Climate change is projected to challenge these management and ecological systems in different ways that are characterized by different levels of uncertainty. For example, there is high certainty that climate will warm by about 2°C more (than late-20th-century averages) by mid-century and about 4°C by end of century, if greenhouse-gas emissions continue their current rates of acceleration. Future precipitation...
We applied a water balance model to predict tidally averaged (subtidal) flows through the Old River and Middle River corridor in the Sacramento–San Joaquin Delta. We reviewed the dynamics that govern subtidal flows and water levels and adopted a simplified representation. In this water balance approach, we estimated ungaged flows as linear functions of known (or specified) flows. We assumed that subtidal storage within the control volume varies because of fortnightly variation in subtidal water level, Delta inflow, and barometric pressure. The water balance model effectively predicts subtidal flows and approaches the accuracy of a 1–D Delta hydrodynamic model. We explore the potential to improve the approach by...
Principal hydrologic responses to climatic and geologic variability in the Sierra Nevada, California
Sierra Nevada snowpack is a critical water source for California’s growing population and agricultural industry. However, because mountain winters and springs are warming, on average, precipitation as snowfall relative to rain is decreasing, and snowmelt is earlier. The changes are stronger at mid-elevations than at higher elevations. The result is that the water supply provided by snowpack is diminishing. In this paper, we describe principal hydrologic responses to climatic and spatial geologic variations as gleaned from a series of observations including snowpack, stream-flow, and bedrock geology. Our analysis focused on peak (maximum) and base (minimum) daily discharge of the annual snowmelt-driven hydrographs...
Providing freshwater to human populations while protecting or rehabilitating ecosystem health is a significant challenge to water resource managers and requires accurate knowledge of aquatic resources. Previous studies of fish assemblages in the San Francisco Estuary and watershed have focused on specific habitat types, water bodies, or geographic subregions. In this study, we use seining data from two monitoring programs to provide an integrated view of spring nearshore resident fish species composition and life history characteristics in five regions: the San Joaquin River, the upper Sacramento River, the lower Sacramento River, the northern Sacramento-San Joaquin Delta (North Delta), and the Interior Delta. Data...
Shallow subembayments respond differently than deep channels to physical forces acting in estuaries. The U.S. Geological Survey measured suspended-sediment concentrations at five locations in Honker Bay, a shallow subembayment of San Francisco Bay, and the adjacent channel to investigate the spatial and temporal differences between deep and shallow estuarine environments. During the first freshwater pulse of the wet season, the channel tended to transport suspended sediments through the system, whereas the shallow area acted as off-channel storage where deposition would likely occur. Following the freshwater pulse, suspended-sediment concentrations were greater in Honker Bay than in the adjacent deep channel, due...
California’s Sacramento–San Joaquin Delta is widely recognized as a highly damaged ecosystem. The Delta is also emblematic of a growing sense worldwide that society needs to do a better job of using scientific knowledge to guide conservation and resource management policies. Fortunately, we now have an unprecedented opportunity to get it right in building structures that support effective science–policy linkages in the Delta. By adopting bold steps to implement a “one Delta, one science” approach for a new Delta Science Plan, California can become a leading example of how to tackle the global problem of rapid ecological change and biodiversity loss. In this essay, we first describe the current paradox—continued...
Genetic variation at 11 microsatellite loci described population genetic structure for Oncorhynchus mykiss in the Central Valley, California. Spatial and temporal variation was examined as well as relationships between hatchery and putative natural spawning anadromous stocks. Genetic diversity was analyzed at two distinct spatial scales: fine-scale within drainage for five populations on Clear Creek; between and among drainage diversity for 23 populations. Significant regional spatial structure was apparent, both within Clear Creek and among rainbow trout populations throughout the Central Valley. Significant differences in allelic frequencies were found among most river or drainage systems. Less than 1% of the...
California’s Central Valley covers about 52,000 square kilometers (km2) and is one of the most productive agricultural regions in the world. More than 250 different crops are grown in the broad alluvial filled structural trough, with an estimated value exceeding $20 billion per year (Faunt 2009) (Figure 1). Central Valley agriculture depends on state and federal water systems that divert surface water, predominantly originating from Sierra Nevada snowmelt, to agricultural fields. Because the valley is semi-arid and the availability of surface water varies substantially from year to year, season to season, and from north to south, agriculture, as it grew, developed a reliance on groundwater for irrigation.
Human activities within a watershed, such as agriculture, urbanization, and dam building, may affect the sediment yield from the watershed. Because the equilibrium geomorphic form of an estuary is dependent in part on the sediment supply from the watershed, anthropogenic activities within the watershed have the potential to affect estuary geomorphology. The Sacramento River drains the northern half of California’s Central Valley and is the primary source of sediment to San Francisco Bay. In this paper, it is shown that the delivery of suspended-sediment from the Sacramento River to San Francisco Bay has decreased by about one-half during the period 1957 to 2001. Many factors may be contributing to the trend in sediment...
The salt marsh harvest mouse (SMHM, Reithrodontomys raviventris) is an endangered species, endemic to the San Francisco Estuary. Despite being protected for almost half a century and being included in a large number of recovery, restoration, and management plans, significant data gaps hinder conservation and management of the species, a challenge further complicated by developing threats such as climate change. In this review, we present the current state of knowledge; highlight research gaps on habitat requirements and distribution, taxonomic status and genetic structure, physiology, reproduction and demographics, population dynamics, and behavior and community interactions; and present an overview of threats to...
The State of Bay–Delta Science 2008 highlighted seven emerging perspectives on science and management of the Delta. These perspectives had important effects on policy and legislation concerning management of the Delta ecosystem and water exports. From the collection of papers that make up the State of Bay–Delta Science 2016, we derive another seven perspectives that augment those published in 2008. The new perspectives address nutrient and contaminant concentrations in Delta waters, the failure of the Delta food web to support native species, the role of multiple stressors in driving species toward extinction, and the emerging importance of extreme events in driving change in the ecosystem and the water supply....
No abstract available.
Sedimentation in the Sacramento–San Joaquin River Delta builds the Delta landscape, creates benthic and pelagic habitat, and transports sediment-associated contaminants. Here we present a conceptual model of sedimentation that includes submodels for river supply from the watershed to the Delta, regional transport within the Delta and seaward exchange, and local sedimentation in open water and marsh habitats. The model demonstrates feedback loops that affect the Delta ecosystem. Submerged and emergent marsh vegetation act as ecosystem engineers that can create a positive feedback loop by decreasing suspended sediment, increasing water column light, which in turn enables more vegetation. Sea-level rise in open water...
Restoration of tidal wetlands may provide an important tool for improving ecological health and water management for beneficial uses of the San Francisco Estuary (hereafter “Estuary”). Given the large losses of tidal wetlands from San Francisco Bay and the Sacramento-San Joaquin Delta in the last 150 years, it seems logical to assume that restoring tidal wetlands will have benefits for a variety of aquatic and terrestrial native species that have declined during the same time period. However, many other changes have also occurred in the Estuary concurrent with the declines of native species. Other factors that might be important in species declines include the effects of construction of upstream dams, large and...
California is regularly impacted by floods and droughts, primarily as a result of too many or too few atmospheric rivers (ARs). This study analyzes a two-decade-long hourly precipitation dataset from 176 California weather stations and a 3-hourly AR chronology to report variations in rainfall events across California and their association with ARs. On average, 10-40 and 60-120 hours of rainfall in southern and northern California, respectively, are responsible for more than half of annual rainfall accumulations. Approximately 10-30% of annual precipitation at locations across the state is from only one large storm. On average, northern California receives 25-45 rainfall events annually (40-50% of which are AR-related)....
The hydraulic gold-mining process used during the California Gold Rush and in many developing countries today contributes enormous amounts of sediment to rivers and streams. Commonly, accompanying this sediment are contaminants such as elemental mercury and cyanide used in the gold extraction process. We show that some of the mercurycontaminated sediment created by hydraulic gold mining in the Sierra Nevada, between 1852 and 1884, ended up over 250 kilometers (km) away in San Francisco Bay; an example of the far-reaching extent of contamination from such activities. A combination of radionuclide dating, bathymetric reconstruction, and geochemical tracers were used to distinguish the hydraulic mining sediment from...
To evaluate the role of restoration in the recovery of the Delta ecosystem, we need to have clear targets and performance measures that directly assess ecosystem function. Primary production is a crucial ecosystem process, which directly limits the quality and quantity of food available for secondary consumers such as invertebrates and fish. The Delta has a low rate of primary production, but it is unclear whether this was always the case. Recent analyses from the Historical Ecology Team and Delta Landscapes Project provide quantitative comparisons of the areal extent of 14 habitat types in the modern Delta versus the historical Delta (pre-1850). Here we describe an approach for using these metrics of land use change...
We use selected monitoring data to illustrate how localized water diversions from seasonal barriers, gate operations, and export pumps alter water quality across the Sacramento-San Joaquin Delta (California). Dynamics of water-quality variability are complex because the Delta is a mixing zone of water from the Sacramento and San Joaquin Rivers, agricultural return water, and the San Francisco Estuary. Each source has distinct water-quality characteristics, and the contribution of each source varies in response to natural hydrologic variability and water diversions. We use simulations with a tidal hydrodynamic model to reveal how three diversion events, as case studies, influence water quality through their alteration...
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