Filters: Tags: RNAseq (X) > partyWithName: Erik K Hofmeister (X)
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The data set contains paired-end, 100 nucleotide long RNA sequencing reads for each sample. Raw sequencing reads ranged from 18-30million reads per sample. Quality trimmed reads were mapped to the Zebra Finch reference genome with an average of 79.0-80.8% mapping rate, corresponding to 18,618 Ensembl gene IDs. Of these, 14,114 genes averaged at least 5 mapped reads across all samples and were utilized for differential expression (DE) analyses. DE analyzed two ways: as pairwise comparisons between treatments to identify specific genes with DEseq2 and as a time course grouping genes into expression paths with EBSeqHMM.
Categories: Data;
Types: Citation;
Tags: National Wildlife Health Center,
RNAseq,
Transcriptome,
USGS Science Data Catalog (SDC),
West Nile virus
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