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Annotated bibliography of grazing effects on amphibians and their habitats (ver. 2.0, February 2022)
This database contains literature citations and associated summaries pertaining to livestock grazing effects on amphibians and their habitats, with an emphasis on the Oregon spotted frog (Rana pretiosa) and other listed/sensitive wetland-breeding amphibians in the western United States. This is not meant to be an exhaustive list, nor did we perform a systematic meta-analysis; rather, literature records were included based on topical relevance. *HINT: If you are looking for the database SEARCH TOOL, scroll down to 'Attached Files' and download 'Annotated_bibliography_with_search_tool.accdb.' Open the database file to enter the search form.* This data release supersedes Rowe, J.C., Pearl, C.A., Adams, M.J., and McCreary,...
Categories: Data;
Tags: Aquatic Biology,
Ecology,
Land Use Change,
USGS Science Data Catalog (SDC),
Wildlife Biology,
OBIS-USA brings together marine biological occurrence data – recorded observations of identifiable marine species at a known time and place, collected primarily from U.S. Waters or with U.S. funding. Coordinated by the Science Analytics and Synthesis (SAS) Program of the United States Geological Survey (USGS), OBIS-USA, strives to meet national data integration and dissemination needs for marine data about organisms and ecosystems. OBIS-USA is part of an international data sharing network (Ocean Biodiversity Information System, OBIS) coordinated by the Intergovernmental Oceanographic Commission, of UNESCO (United Nations Educational, Science and Cultural Organization) International Oceanographic Data and Information...
We determined their critical thermal maximum (CTMax) of four species of Eleutherodactylus frogs (E. wightmanae, E. brittoni, E. antillensis, E. coqui) to understand their response to warming temperatures. Data consist of capture history, body condition, and temperature at which the frog exhibited spasms and erratic behavior, which may impair predator avoidance. Our results underscored the potential vulnerability of Eleutherodactylus species exhibiting lower CTMax to the forecasted warming of tropical zones (e.g., E. wightmanae, E. brittoni).
Categories: Data;
Tags: Abundance,
Critical Maximum temperature (CTMax),
Eleutherodactulys,
biota,
occupancy,
Using a solutions-oriented, multi-agency collaboration, we propose to pilot a large-scale assessment of an alternative (herding, electric- and virtual-fence) grazing strategy designed to mimic pre-colonial grazing patterns by bison, to ascertain their value for local- and regional-scale assemblages ofsagebrush- and grassland-associated birds in Montana. A fundamental goal of most wildlife-based grazing programs is to foster a mosaic of patches that represent the broadest possible spectrum of habitat types that benefits different sagebrush- and grassland-associated birds in different parts of the landscape (for example, western meadowlarks, vesper sparrows, and thick-billed longspur in open, heavily grazed areas;...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Federal resource managers,
Grasslands,
Project,
SA Science Catalog,
Sagebrush,
This data release consists of a single table that includes sample site geographic locations, insect prey abundance, and bat activity and behavior metrics. The dataset was used to develop multi-state occupancy models of foraging habitat use by Hawaiian hoary bats (Lasiurus cinereus semotus).
We estimated global cyanobacterial biomass in the main reservoirs of cyanobacteria on Earth: marine and freshwater plankton, arid land soil crusts, and endoliths. Estimates were based on typical population density values as measured during our research, or as obtained from literature surveys, which were then coupled with data on global geographical area coverage. Among the marine plankton, the global biomass of Prochlorococcus reaches 120 × 10^12 grams of carbon (g C), and that of Synechoccus some 43 × 10^12 g C. This makes Prochlorococcus and Synechococcus, in that order, the most abundant cyanobacteria on Earth. Tropical marine blooms of Trichodesmium account for an additional 10 × 10^12 g C worldwide. In terrestrial...
Categories: Publication;
Types: Citation,
Journal Citation;
Tags: Algological Studies,
Cyanobacteria,
abundance,
arid land soils,
benthos,
Density estimates of four mammal species in the upper subalpine and alpine zones of the Sierra Nevada range, 2008 - 2012. The estimates were derived from variable distance data collected 3-4 per year along each of 21 transects (10 km in length). The transects were randomly selected from a pool of 53 potential routes. Nine transects were sampled in 2008, 12 were sampled in 2009, 19 were sampled in 2010, 21 were sampled in 2011, and 17 were sampled in 2012. All counts were done in July and August each year. Replicate samples within a given year were done within 2-8 days of each other. All counts were done by single observers. The spreadsheet has six worksheets, including three with density estimates for each species...
Categories: Data;
Tags: Abundance,
Alpine,
Belding's ground squirrel,
Distance sampling,
Golden-mantled ground squirrel,
The files in the sub-folder "1. Juvenile coho salmon abundance and survival" consist of fish survey data and the associated analysis. The file "02_Fish survey data_all events_2019-11-27.csv" contains the actual fish survey data that was collected in Mason Creek, tributary of East Fork Lewis River, SW Washington, during summer of 2017. The protocol for the fish surveys are outline in the file "Fish Rescue Field Protocol_2017_FINAL VERSION_2017-06-01.pdf". The abundance and survival analysis can be found in the file "Juvenile MR abundance_Coho_02Contraints_2019-12-02.R". This file should be loaded through the .Rproj file "Fish Abundance.Rproj". There are many files needed to run the analysis that consist of summaries...
Categories: Data;
Tags: Drought,
Drought, Fire and Extreme Weather,
Fish,
Northwest CASC,
Rivers, Streams and Lakes,
The Long Term Resource Monitoring (LTRM) annual fish monitoring began on the Upper Mississippi and Illinois Rivers in 1989. During the first two years samples were collected at a series of fixed sampling sites, then in 1993 a stratified random sampling approach was added to the collection effort. This approach utilizes a computer routine that randomly selects sampling sites from a pool of potential sites that have been categorized by strata (e.g., aquatic habitat type, distance to shore, connectivity to main channel). The results from these collections are stored in an Oracle database at the Upper Midwest Environmental Science Center (UMESC). UMESC provides free access to the data through the Centers Web site (www.umesc.usgs.gov)....
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Fish,
Fishery,
Illinois,
Illinois River,
Iowa,
These data were compiled for the Altar Valley Conservation Alliance and the U. S. Fish and Wildlife Service to identify and quantify the spatial distribution of fine fuels in relation to wildfire management across jurisdictional boundaries. Objective(s) of our study were to map the 2021 annual distribution of the biomass (kg/ha) of fine fuels (grasses, shrubs, and forbs) for the whole of the Altar Valley, AZ, including the Buenos Aires National Wildlife Refuge. These data represent estimated biomass of fine fuels (kg/ha) at a 10-m resolution. These data were collected/created in September through October 2021 for the Altar Valley, located in Pima County, AZ, USA. These data were collected/created by the U.S. Geological...
The dataset is comprised of historical observations and predictions of winter colony counts at known sites for three bat species (little brown bat, Myotis lucifugus; tricolored bat, Perimyotis subflavus; and big brown bat, Eptesicus fuscus). The dataset consists of two separate but related data files in tabular format (comma-separated values [.csv]). Each data set consists of predicted winter counts derived using winter status and trends modeling methods developed by the North American Bat Monitoring Program (NABat). These two predicted winter count data sets were used to inform NABat summertime status and trends analysis: 1) modeled abundance predictions for all hibernacula for all three species from 2010-2021,...
Categories: Data;
Tags: Abundance,
Ecology,
Hibernacula,
USGS Science Data Catalog (SDC),
United States and Canada,
This project acquired, federated and curated approximately one million new observations to the Avian Knowledge Network. These new observations, in addition to millions of existing records, were used to model the distribution and abundance of 26 species of land birds in the southern portion of the North Pacific Landscape Conservation Cooperative (NPLCC) region including CA, OR and WA. The models were based on climate and modeled vegetation.Using the models, maps were created showing the distribution and abundance of each species for current (late 20th century) conditions and projected the models to future conditions (2070) based on five regional climate models. The bird models were also used to create maps of conservation...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Assessenspecies migration,
BIOSPHERICINDICATORS,
California,
OR-1,
OR-3,
This folder contains data in three parts. The juvenile coho salmon abundance and survival data consists of fish survey data and the associated analysis, including documentation of the analysis code, methods, and protocols used. Habitat survey data consists of both reach-level (~100 meter sections) and continuous (watershed scale) surveys. The summaries item and its contents include summaries produced from fish and habitat surveys conducted in Mason Creek, tributary of the East Fork Lewis River, SW Washington, during summer of 2017.
MethodsStudy area: Our initial study area included the entire globe. We began with a seamless grid of cells with a resolution of 0.5 degrees (i.e., ~50 km at the equator). Next, we created polylines representing coastlines using SRTM (Shuttle Radar Topographic Mission) v4.1 global digital elevation model data at a resolution of 250 m (Reuter et al. 2007). We used these coastline polylines to identify and retain cells that intersected the coast. We excluded 192,227 cells that did not intersect the coast. To avoid cells with minimal potential coastal wetland habitat, we used the coastline data to remove an additional 1,056 coastal cells that contained less than or equal to 5% coverage of land. We also removed 176...
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Climate change,
USGS Science Data Catalog (SDC),
abundance,
climate gradients,
climatic drivers,
This Data Release provides brook trout abundance records for pool habitats within 2 streams in Shenandoah National Park (Staunton River and Paine Run). The data were collected with 3-pass backpack electrofishing conducted during baseflow conditions between 2012-2021. This dataset enables spatial analysis of brook trout population responses to drought conditions.
Categories: Data;
Tags: Aquatic Biology,
Ecology,
Ecology,
Shenandoah National Park, Virginia,
USGS Science Data Catalog (SDC),
Density estimates of four mammal species in the upper subalpine and alpine zones of the Sierra Nevada range, 2008 - 2012. The estimates were derived from variable distance data collected 3-4 times per year at point count stations randomly located along line transects. There were 21 transects (10 km in length) that had been randomly selected from a pool of 53 potential routes, with 10 point count stations along each transect (minimum of 200 m spacing between stations). 45 stations were sampled in 2008 (5 stations on each of 9 transects), 60 stations were sampled in 2009 (5 stations on each of 12 transects),190 stations were sampled in 2010 (10 stations on each of 19 transects), 210 stations were sampled in 2011 (10...
Categories: Data;
Tags: Abundance,
Alpine,
Belding's ground squirrel,
Distance sampling,
Golden-mantled ground squirrel,
Note: this data release has been deprecated. Please see new data release here: https://doi.org/10.5066/P9347I2H. These data were compiled to estimate fine-fuel abundance and distribution across the Buenos Aires National Wildlife Refuge in southern Arizona, USA. The objectives of the study were to develop and validate annual estimates of fine fuel (biomass of herbaceous vegetation) for the refuge and to assess changes in fine fuels through time in response to wildfire and prescribed fire. These data represent the amount of herbaceous biomass or fine fuels (kg/ha) present at a 10-m resolution derived from in-situ estimates of ground cover modeled with satellite imagery. These satellite image data were collected over...
Categories: Data;
Tags: 10-m resolution,
Arizona,
Botany,
Buenos Aires National Wildlife Refuge,
Ecology,
This data release includes metadata and tabular data that documents the endangered orangeblack Hawaiian damselfly (Megalagrion xanthomelas) at Kaloko-Honokohau National Historical Park during 2016-2017. Data sets document (1) numbers of damselflies observed during surveys, (2) habitat characteristics of anchialine pools at which damselflies were surveyed, (3) substrates on which female damselflies exhibited egg-laying behavior, and (4) continuous 30-day measurements of temperature and salinity taken at four pools.
This dataset is three comma-separated values (csv) files containing fish haul information collected during trawl surveys in the Chukchi Sea during the 9 August - 3 September 2015 Arctic Marine Biodiversity Observing Network (AMBON) research cruise. Tables describe haul event information, species occurrence per haul, and fish morphometric information. Fish were collected with a plump-staff beam trawl and Isaac-Kidds midwater trawl, identified to species, and their life stage, length, and weight were measured and recorded. The data was transformed from the native format into a table structure using Darwin Core terms and organized in the OBIS-ENV-DATA format.
This project acquired, federated and curated approximately one million new observations to the Avian Knowledge Network. These new observations, in addition to millions of existing records, were used to model the distribution and abundance of 26 species of land birds in the southern portion of the North Pacific Landscape Conservation Cooperative (NPLCC) region including CA, OR and WA. The models were based on climate and modeled vegetation.Using the models, maps were created showing the distribution and abundance of each species for current (late 20th century) conditions and projected the models to future conditions (2070) based on five regional climate models. The bird models were also used to create maps of conservation...
Categories: Data,
Project;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: 2011,
Academics & scientific researchers,
Applications and Tools,
Assessenspecies migration,
BIOSPHERICINDICATORS,
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