Filters: Types: Map Service (X) > Types: OGC WMS Service (X) > Categories: Data (X) > partyWithName: U.S. Geological Survey - ScienceBase (X) > partyWithName: Ecosystems (X)
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(i) This dataset presents macroscopic and microscopic pathological findings and bacteriology of 178 tadpoles diagnosed with Severe Perkinsea Infections. (ii) Specimen were collected and submitted to the NWHC as part of mortality investigations and collection of specimen from apparently healthy populations as part of ongoing amphibian health monitoring. (iii) Necropsies and gross evaluation of carcasses were carried out under a dissecting microscope. (iv) Severe Perkinsea Infection was confirmed in each specimen by histological observation of pathological changes in tissues with presence of Perkinsea-like organisms in at least one organ, including brain, eyes, gastrointestinal tract, gills, heart, liver, lungs, kidney,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: USGS Science Data Catalog (SDC),
Unites States of Ameica,
amphibian,
biota,
case definition,
These data were collected as part of a field trial to test the effectiveness of a sylvatic plague vaccine (see Rocke et al., 2017 for details). Vaccine and control plots were selected randomly from the available pairs at each location. Baits containing Rhodamine B, a biomarker, were distributed at each plot. At least 1 week and no more than 2 months post-baiting each year, local collaborators captured, marked, and sampled prairie dogs. Hair and whisker samples were collected from up to 50 unique prairie dogs from each plot each year. Sex, age, weight, and the identity of all current-year and prior-year recaptures were recorded for each captured animal. In the laboratory, hair/whiskers were assessed for the presence...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Arizona,
Awapa Plateau,
Buffalo Gap National Grasslands,
Cedar City,
Charles M. Russell National Wildlife Refuge,
These data represent trapping effort and captures of deer mice at Point Reyes National Seashore, Marin County, California. Deer mice were captured and marked with ear tags to allow identification of individuals. The location of captures can be used in a spatially explicit capture recapture model to estimate density of mice and how mouse density varies by site and habitat type.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service,
Shapefile;
Tags: California,
Ecology,
Marin County,
Point Reyes National Seashore,
USGS Science Data Catalog (SDC),
In Hawai‘i and other oceanic islands with few native land mammals, black rats (Rattus rattus) are among the most damaging invasive vertebrate species to native forest bird populations and habitats, due to their arboreal behavior and generalist foraging habitats and habitat use. This is a selected data set used to assess the impacts of rodenticide treatment on black rat (Rattus rattus) abundance within Hawaii Volcanoes National Park (HAVO). The key objective was to identify rat abundance before and after rodenticide treatment, using paired non-treatment and treatment plots at high elevation (1700-1830m) and low elevation (1220-1340 m). This dataset includes the results of a mark recapture study that took place within...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: BACI,
Hawaii,
Hawaii County 2,
Hawaii Volcanoes National Park,
Hawaii Volcanoes National Park,
The data herein are geochemical (from X-Ray fluorescence spectrometry), grain size (percent clay, silt, sand), lithological (loss on ignition data), bathymetric, reconstructed IVT, and radioactive isotopes (14-C, 210-Pb, 226-Ra, and 137-Cs). These data were collected from sediments from Leonard Lake, Mendocino County, California, USA starting in 2014. Together, these data provide evidence for a record of extreme precipitation going back three millennia, showing regional pluvial and drought cycles.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: California,
Climatology,
Geography,
Hydrology,
Limnology,
This data set consists of monthly averages of soil and litter properties. Rows are grouped in the following order: year, month, vegetation type, plot ID. Within a single month five plots were sampled within each of the 2 vegetation types (10 plots total). Columns F+ represent individual measurements.
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Mississippi River,
Nitrogen cycling,
Pool 8,
USGS Science Data Catalog (SDC),
Upper Mississippi River,
A site in north eastern MI, Oscoda Township, has some of the highest recorded exposure in birds to perfluorinated substances (PFASs) in the U.S. Some egg and plasma concentrations at that location exceeded the lowest reproductive effect threshold established for two avian laboratory species. The objectives of this study were to determine whether there were reproductive effects or physiological responses in a model bird species, the tree swallow (Tachycineta bicolor), associated with this extremely high exposure to PFASs. The lack of exposure above background to other contaminants at this site allowed for an assessment of PFAS effects without the complication that responses may be caused by other contaminants. A...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Clarks Marsh, Oscoda, Michigan, USA,
Oscoda, Michigan, USA,
PFOS,
Perfluorinated chemicals,
USGS Science Data Catalog (SDC),
Invasive species may vary in their seasonal distribution and abundance due to environmental conditions such as precipitation and temperature. Bigheaded carps, which include silver and bighead carp, are one such taxon of invasive species that appear to change habitats seasonally. Seasonal changes in bigheaded carp distribution may occur because of hydrological changes, water temperature changes, and spawning activities. Monitoring this seasonal dispersal and migration is important for management to control the population size and spread of the species. We examined if environmental DNA (eDNA) approaches could detect seasonal changes in the occurrence of DNA in water samples and used these approaches to calculate the...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Americus,
French Post,
Indiana,
Mascouten,
Occupancy modeling,
Daily HOBO Pro V.2 soil temperature measurements at the Great Dismal Swamp National Wildlife Refuge (2015-2017). Data collected in Great Dismal Swamp National Wildlife Refuge in Southern VA and Northern NC from 9 plot sites representing three general forest types: Atlantic White Cedar, Pocosin Pine, and Maple and Gum.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Climate,
Great Dismal Swamp National Wildlife Refuge,
Soil Sciences,
USGS Science Data Catalog (SDC),
Wetland
Intracoelomic implantation of electronic tags has become a common method in fishery research, but rarely are fish examined by scientists after release to understand the extent that surgical incisions have healed. Walleye (Sander vitreus) are a valuable, highly-exploited fishery resource in the Laurentian Great Lakes. Here, fishery capture of walleye with internal acoustic transmitters combined with a high reward program provided multiple opportunities to examine photographs and quantify the status of surgical incisions. Walleye (n=926) from reef and river spawning populations in Lake Erie and Lake Huron were implanted with acoustic transmitters during spring spawning events from 2011 to 2016. Incisions were closed...
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Detroit,
Lake Huron,
Lower Maumee,
Plant and animal tagging,
Sandusky,
To determine if invasive annual grasses increased around energy developments after the construction phase, we calculated an invasives index using Landsat TM and ETM+ imagery for a 34-year time period (1985-2018) and assessed trends for 1,755 wind turbines (from the U.S. Wind Turbine Database) installed between 1988 and 2013 in the southern California desert. The index uses the maximum normalized difference vegetation index (NDVI) for early season greenness (January-June), and mean NDVI (July-October) for the later dry season. We estimated the relative cover of invasive annuals each year at turbine locations and control sites and tested for changes before and after each turbine was installed. These data were used...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service,
Shapefile;
Tags: California,
California South,
Google Earth Engine,
Landsat,
Normalized Difference Vegetation Index,
These data sets are is a compilation of bird and environmental samples obtained from 6 sites in Maricopa County, Arizona on the dates shown. Sites were only visited and sampled if they had Rosy-cheeked lovebirds coming to bird feeders at the location and with the permission of the property owner. Two swab samples were obtained from each captured bird and 3 swab samples were collected from the environment at each site. Each sample was tested by PCR for Chlamydia psittaci, Psittacine Circovirus genotype 1 [PCV-1]), and Psittacine Circovirus genotype 2 (PCV-2) and, for appropriate samples (love birds and environmental samples) and where enough sample material remained for PBFD virus Pathotype 2.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Arizona,
Chlamydia psittaci,
Maricopa,
Mesa,
Phoenix,
Nitrogen, phosphorus, and suspended-sediment loads, and changes in loads, in major rivers across the Chesapeake Bay watershed have been calculated using monitoring data from the Chesapeake Bay River Input Monitoring Network (RIM) stations for the period 1985 through 2017. Nutrient and suspended-sediment loads and changes in loads were determined by applying a weighted regression approach called WRTDS (Weighted Regression on Time, Discharge, and Season). The load results represent the total mass of nitrogen, phosphorus, and suspended sediment that was exported from each of the RIM watersheds.
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Chesapeake Bay Watershed,
Delaware,
Maryland,
New York,
Pennsylvania,
Fibropapillomatosis (FP) is a tumor disease of marine turtles associated with Chelonid herpesvirus 5 (ChHV5) that has historically been refractory to growth in tissue culture. Here, we show for the first time de novo formation of ChHV5-positive intranuclear inclusions in cultured green turtle cells, which is indicative for active lytic replication of the virus. The minimal requirements to achieve lytic replication in cultured cells included 1) either in-vitro culturing of ChHV5-positive tumor biopsies or organotypic cultures consisting of ChHV5-positive turtle fibroblasts in collagen rafts seeded with ChHV5-negative or -positive turtle keratinocytes and 2) keratinocyte maturation, which occurred naturally in explanted...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Hawaii,
Herpesvirus,
USGS Science Data Catalog (SDC),
electron microscopy,
immunohistochemistry,
The data set contains results for nine serum biochemistries in molting Pacific black brant (Branta bernicla nigricans). These data were used to calculate reference intervals (sometimes referred to as normal values) for the nine serum biochemistries. All brant were after-hatch year. All samples were collected in 2006 and 2007 in the Teshekpuk Lake Special Area, Alaska.
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Alaska,
Arctic Coastal Plain,
Serum biochemistry,
Teshekpuk Lake Special Area,
USGS Science Data Catalog (SDC)
Nitrogen, phosphorus, and suspended-sediment loads, and changes in loads, in major rivers across the Chesapeake Bay watershed have been calculated using monitoring data from the Chesapeake Bay River Input Monitoring Network (RIM) stations for the period 1985 through 2017. Nutrient and suspended-sediment loads and changes in loads were determined by applying a weighted regression approach called WRTDS (Weighted Regression on Time, Discharge, and Season). The load results represent the total mass of nitrogen, phosphorus, and suspended sediment that was exported from each of the RIM watersheds. To determine the trend in loads, the annual load results are flow normalized to integrate out the year-to-year variability...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Chesapeake Bay Watershed,
Delaware,
Maryland,
New York,
Pennsylvania,
Data are included for field surveys conducted for freshwater mussels within the Pine Creek watershed in the Mid-Atlantic region of the United States. Timed search (qualitative) surveys were conducted in ~200 meter sections of river between 1995 and 2009; The number of mussels of each species and associated search time were recorded for each survey section to determine a catch per unit effort (CPUE; number of individuals found per person hour).
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Aquatic Biology,
USGS Science Data Catalog (SDC)
This data release presents results from a laboratory study designed to measure the effect of temperature on denitrification rates in sediments collected from 5- to 30-cm depth below the lake bottom, at a location where groundwater discharges to the lake. Sediment cores were collected June 25, 2014 from the West site (Fishermans Cove) in Ashumet Pond, Cape Cod, MA then shipped to Boulder, CO for laboratory experiments. Groundwater used for these experiments was collected from a well just upgradient of the sediment collection site. Denitrification rates were determined on sediment plus groundwater slurries maintained under anaerobic conditions and employing the acetylene block method. Nitrous oxide concentrations...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: USGS Science Data Catalog (SDC)
To describe calling activity of Pseudacris crucifer in relation to temperature, precipitation, and wetland water levels, we programmed an acoustic recorder (Wildlife Acoustics) to sample seasonal amphibian calls remotely at study site SC4DAI2 in the St. Croix National Scenic Riverway from 2008 to 2012. We programmed the recorder to sample for five minutes at the top of every hour of every day from late winter/early spring through late summer. We used the Songscape option in Songscope software to generate annual summaries of all of our acoustic samples from SC4DAI2. These summaries included a median dB level for each prescribed frequency within each recording. Pseudacris crucifer, the spring peeper, inhabited SC4DAI2...
From 1994-1997 I surveyed breeding birds and sampled vegetation at 391 random points on UMR floodplain forest along a latitudinal gradient to characterize bird assemblages and associations with gradients in forest structure at the local survey point and land cover composition within 200m radius of survey points (landscape scale). We conducted 10 minute 50m fixed radius point counts (Ralph et al. 1993) to survey birds during the breeding period between 30 May and 10 July in all years. We sampled the southernmost pool (13) first and then progressed to each pool in succession northward, finishing in Pool 4, sampling each point once a season. Surveys were conducted from 30 minutes before to five hours after local sunrise....
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