Filters: Tags: biota (X) > partyWithName: U.S. Geological Survey - ScienceBase (X)
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To improve our understanding of health and immune function in tortoises, we evaluated both standard blood diagnostic (body condition, hematologic, plasma biochemistry values, trace elements, plasma proteins, vitamin A levels) and gene transcription profiles in 21 adult tortoises (11 clinically abnormal; 10 clinically normal) from Clark County, NV, USA. Necropsy and histology evaluations from clinically abnormal tortoises revealed multiple physiological complications, with moderate to severe rhinitis or pneumonia being the primary cause of morbidity in all but one of the examined animals. Improved methods for health assessments are an important element of monitoring tortoise population recovery and can support the...
Categories: Data;
Tags: Clark County, Nevada,
Hidden Valley,
USGS Science Data Catalog (SDC),
biota,
health
This raster dataset depicts percent canopy cover derived from 1-m conifer classifications when aggregated to 30-m cells. Conifer features were classified from 2010, 2012, and 2013 NAIP Digital Ortho Quarter Quads (DOQQ) using the Feature Analyst 5.0 extension for ArcGIS 10.1. Tiles were organized and grouped by Nevada Department of Wildlife Population Management Unit (PMU) locations, plus a 10 km area beyond the PMU extent. Analysts visually identified conifers in the imagery using false color infrared settings and digitized multiple trees per tile as training locations for classification. After performing hierarchical learning and clutter removal with Feature Analyst to remove non-conifer features on output shapefiles,...
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: Biota,
Conifers,
Environment,
Great Basin,
Land cover,
This dataset represents ease of access to bottomland areas for vegetation treatments. Access may be by road, 4x4 near road, hike in by field crews or requiring overnight camping or raft access. Access is considered for each side of the river separately.
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Arches National Park,
Canyonlands National Park,
Colorado River,
Grand County,
Moab,
This data set shows the extent of the Colorado River Conservation Planning project bottomland area as delineated by topography and vegetation, The bottomland area is subdivided into 1 km polygons measured from the upstream project boundary. Reach breaks were determined by large topographic shifts and/or tributary junctions by John Dohrenwend. Please see the project report for more details.
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Arches National Park,
Canyonlands National Park,
Colorado River,
Grand County,
Moab,
Wildfire can impact soil-physical and soil-hydraulic properties, with major implications for hydrologic and ecologic response. The durations of these soil impacts are poorly characterized for some forested environments. This dataset sheds light on the first four years of recovery of soil-physical properties of bulk density, loss on ignition (measure of soil organic matter), ground cover, and soil particle size distribution and of soil-hydraulic properties of sorptivity and field-saturated hydraulic conductivity. The dataset also includes a simple infiltration model used to examine infiltration as the sites recover from fire. Sample locations within the 2013 Black Forest Fire study area are: BF1, UTM-Easting (m)...
(i) This dataset presents macroscopic and microscopic pathological findings and bacteriology of 178 tadpoles diagnosed with Severe Perkinsea Infections. (ii) Specimen were collected and submitted to the NWHC as part of mortality investigations and collection of specimen from apparently healthy populations as part of ongoing amphibian health monitoring. (iii) Necropsies and gross evaluation of carcasses were carried out under a dissecting microscope. (iv) Severe Perkinsea Infection was confirmed in each specimen by histological observation of pathological changes in tissues with presence of Perkinsea-like organisms in at least one organ, including brain, eyes, gastrointestinal tract, gills, heart, liver, lungs, kidney,...
Categories: Data;
Types: Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: USGS Science Data Catalog (SDC),
Unites States of Ameica,
amphibian,
biota,
case definition,
These data were compiled to evaluate the reproductive ecology of Agassiz's desert tortoises (Gopherus agassizzi) in the Sonoran Desert of California using two populations within Joshua Tree National Park, including five reproductive seasons that spanned 20 years (1997-1999, 2015-2016). Compared to their conspecifics inhabiting the Mojave Desert, the reproductive ecology of G. agassizii in the Sonoran Desert is understudied. Climatic variation between the two deserts can affect reproductive ecology, including fecundity and clutch phenology. Mature female tortoises (straight-line carapace length ≥ 20 cm) outfitted with radiotransmitters were located and X-radiographed approximately every 10-14 days during the reproductive...
Categories: Data;
Tags: Agassiz's desert tortoise,
California,
Ecology,
Geography,
Gopherus agassizii,
A compilation of all known nest records and locations to identify landscape-scale parameters (distance to coast, elevation, slope, and land cover) that provide potential nesting habitat in four regions: northern Alaska, Aleutian Islands, Alaska Peninsula Mountains and Kodiak Island, and Pacific Coastal Mountains (including nearshore interior Canada). These data support the following publication: Felis J.J., Kissling M.L., Kaler R.S.A., Kenney L.A., Lawonn M.J., 2016. Identifying Kittlitz’s Murrelet nesting habitat in North America at the landscape scale. Journal of Fish and Wildlife Management 7(2):xx-xx; e1944-687X. doi: 10.3996/112015-JFWM-116
Categories: Data;
Types: Citation,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
OGC WMS Service;
Tags: biota,
environment,
health,
oceans
wy_lvl7_coarsescale: Wyoming hierarchical cluster level 7 (coarse-scale) for Greater sage-grouse We developed a hierarchical clustering approach that identifies biologically relevant landscape units that can 1) be used as a long-term population monitoring framework, 2) be repeated across the Greater sage-grouse range, 3) be used to track the outcomes of local and regional populations by comparing population changes across scales, and 4) be used to inform where to best spatially target studies that identify the processes and mechanisms causing population trends to change among spatial scales. The spatial variability in the amount and quality of habitat resources can affect local population success and result in different...
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Centrocercus urophasianus,
Greater sage-grouse,
United States,
Wyoming,
adaptive management,
This dataset represents an archived record of annual California sea otter surveys from 1985-2014. Survey procedures involve counting animals during the "spring survey" -- generally beginning in late April or early May and usually ending in late May early June but may extend into early July, depending on weather conditions. Annual surveys are organized by survey year and within each year, three shapefiles are included: census summary of southern sea otter, extra limit counts of southern sea otter, and range extent of southern sea otter. The surveys, conducted cooperatively by scientists of the U.S. Geological Survey, California Department of Fish and Wildlife, U.S. Fish and Wildlife Service and Monterey Bay Aquarium...
Categories: Data;
Tags: California,
Central California Coastal,
Coast,
Southern California Coastal,
USGS Science Data Catalog (SDC),
This is a model showing general habitat diversity, including both the structural and cover type diversity. See Open File Report, Rasmussen and Shafroth, Colorado River Conservation Planning for geoprocessing details.
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Arches National Park,
Canyonlands National Park,
Colorado River,
Grand County,
Moab,
The point data file ("Soda Fire Point and Pasture Data (2016).Point Data.csv") includes 2016 vegetative cover values of exotic annual grass and perennial grass measured within three different types of plots for 75 pastures in the Soda Fire, which burned in 2015: 6m² plot using a grid-point intercept photo software, SamplePoint (Booth et al. 2006), 1m² quadrat using an unguided rapid ocular estimate in the field, 531m² circular plot using an unguided rapid ocular estimate in the field. Smaller plots were nested within larger plots. The pasture data file ("Soda Fire Point and Pasture Data (2016).Pasture Data.csv") includes pasture level metrics of area, elevation, precipitation, slope, heatload, soils, and herbicide...
The NABat sampling frame is a grid-based finite-area frame spanning Canada, the United States, and Mexico consisting of N total number of 10- by 10-km (100-km2) grid cell sample units for the continental United States, Canada, and Alaska and 5- by 5-km (25km2) for Hawaii and Puerto Rico. This grain size is biologically appropriate given the scale of movement of most bat species, which routinely travel many kilometers each night between roosts and foraging areas and along foraging routes. A Generalized Random-Tessellation Stratified (GRTS) Survey Design draw was added to the sample units from the raw sampling grids (https://doi.org/10.5066/P9M00P17). This sampling design produces an ordered list of units such that...
Polygon locations of fire perimeters in the Sky Island mountain ranges in the Madrean Archipelago Ecoregion of the southwestern United States and northern Mexico. These fires occurred from 1985 to 2011 and were mapped using Landsat satellite imagery.
The "MasterDB-csv-final2" dataset includes 548 laboratory measurements of sediment total mercury (STHg, nanograms per gram of soil, dry), bulk density (BD, grams per cm3 of soil, dry), percent of soil organic matter (%OM, loss on ignition, LOI), percent of soil organic carbon (%SOC, calculated using the Redfield's number), RHgC (Hg to carbon ratio), and age (YBP) from 13 permafrost cores collected from 2004 to 2012 in the interoir and northern slope of Alaska by trained personnel from the U.S. Geological Survey National Research Program and the National Snow and Ice Data Center in Boulder, Colorado.
This dataset represents the relative average amount of non-woody cover within 2 ha) of bottomland along the Colorado River from the Colorado state line (San Juan and Grand Counties, Utah) to the southern Canyonlands NP boundary, as of September 2010. Traditional image interpretation cues were used to develop the polygons, such as shape, size, pattern, tone, texture, color, and shadow, from high resolution, true color, aerial imagery (0.3m resolution), acquired for the project. Additional, public available aerial photos (NAIP, 2011) were used to cross-reference cover classes. As with any digital layer, this layer is a representation of what is actually occurring on the ground. Errors are inherent in any interpretation...
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Arches National Park,
Canyonlands National Park,
Colorado River,
Grand County,
Moab,
We used the 1981 historical imagery of the Escalante River, Utah in ArcGIS to quantify channel area and average width and quantify woody riparian vegetation cover in two reaches of the river. Reach 1 was approximately 15 river kilometers (rkms) long and located between Sand and Boulder creeks within Grand Staircase Escalante National Monument. Reach 2 was approximately 16 rkms in length, extending from the Glen Canyon National Recreation Area boundary to just upstream of Choprock Canyon. We delineated the extent of active channel. Active channel was defined as the portion of the channel free of vegetation. We also delineated fluvial geomorphic features such as point bars, mid-channel bars, lateral bars and floodplain....
Categories: Data;
Types: Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Escalante River, Utah,
Riparian ecosystems,
Southwestern U.S.,
biota,
channel narrowing,
Hydroacoustic estimates of fish density are used for fisheries management in central Lake Erie. Hydroacoustic data were collected along up to four cross-lake transects in central Lake Erie July 2010 through July 2019. Software-generated raw variables used for calculating estimates of hydroacoustic fish densities are presented here.
Categories: Data;
Tags: Aquatic Biology,
Great Lakes,
Lake Erie,
USGS Science Data Catalog (SDC),
aquatic biology,
This dataset represents the variety (unique structural classes: water, bare, herbaceous, short shrubs, medium shrubs, short trees, tall trees) within 1 ha of bottomland areas. Traditional image interpretation cues were used to develop the polygons, such as shape, size, pattern, tone, texture, color, and shadow, from high resolution, true color, aerial imagery (0.3m resolution), acquired for the project. Additional, public available aerial photos (NAIP, 2011) were used to cross-reference cover classes. As with any digital layer, this layer is a representation of what is actually occurring on the ground. Errors are inherent in any interpretation of ground qualities. Due to the "snapshot" nature of the aerial photos,...
Categories: Data;
Types: Citation,
Downloadable,
Map Service,
OGC WFS Layer,
OGC WMS Layer,
Shapefile;
Tags: Arches National Park,
Canyonlands National Park,
Colorado River,
Grand County,
Moab,
This dataset summarizes various sedimentary data from ten U.S. Geological Survey (USGS) surface water sites across the contiguous United States. These sites include: 01648010 Rock Creek at Joyce Road, Washington, DC 05586300 Illinois River at Florence, Illinois 06731000 Cherry Creek below Cherry Creek Lake, Colorado 06807000 Missouri River at Nebraska City, Nebraska 06935965 Missouri River at St. Charles, Missouri 08374550 Rio Grande near Castolon, Texas 08375300 Rio Grande at Rio Grande Village, Big Bend National Park, Texas 09404200 Colorado River above Diamond Creek near Peach Springs, Arizona 11447650 Sacramento River at Freeport, California 12046260 Elwha River at diversion near Port Angeles, Washington The...
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