Filters: Contacts: Larry R. Brown (X)
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Climate change is driving rapid changes in environmental conditions and affecting population and species’ persistence across spatial and temporal scales. Integrating climate change assessments into biological resource management, such as conserving endangered species, is a substantial challenge, partly due to a mismatch between global climate forecasts and local or regional conservation planning. Here, we demonstrate how outputs of global climate change models can be downscaled to the watershed scale, and then coupled with ecophysiological metrics to assess climate change effects on organisms of conservation concern. We employed models to estimate future water temperatures (2010–2099) under several climate change...
Anthropogenic climate change amounts to a rapidly approaching, “new” stressor in the Sacramento–San Joaquin Delta system. In response to California’s extreme natural hydroclimatic variability, complex water-management systems have been developed, even as the Delta’s natural ecosystems have been largely devastated. Climate change is projected to challenge these management and ecological systems in different ways that are characterized by different levels of uncertainty. For example, there is high certainty that climate will warm by about 2°C more (than late-20th-century averages) by mid-century and about 4°C by end of century, if greenhouse-gas emissions continue their current rates of acceleration. Future precipitation...
Estuaries are dynamic environments at the land–sea interface that are strongly affected by interannual climate variability. Ocean–atmosphere processes propagate into estuaries from the sea, and atmospheric processes over land propagate into estuaries from watersheds. We examined the effects of these two separate climate-driven processes on pelagic and demersal fish community structure along the salinity gradient in the San Francisco Estuary, California, USA. A 33-year data set (1980–2012) on pelagic and demersal fishes spanning the freshwater to marine regions of the estuary suggested the existence of five estuarine salinity fish guilds: limnetic (salinity = 0–1), oligohaline (salinity = 1–12), mesohaline (salinity...
Providing freshwater to human populations while protecting or rehabilitating ecosystem health is a significant challenge to water resource managers and requires accurate knowledge of aquatic resources. Previous studies of fish assemblages in the San Francisco Estuary and watershed have focused on specific habitat types, water bodies, or geographic subregions. In this study, we use seining data from two monitoring programs to provide an integrated view of spring nearshore resident fish species composition and life history characteristics in five regions: the San Joaquin River, the upper Sacramento River, the lower Sacramento River, the northern Sacramento-San Joaquin Delta (North Delta), and the Interior Delta. Data...
We assessed the structure of periphyton, benthic macroinvertebrate, and fish assemblages and their associations with environmental variables at 17 sites on streams of the highly urbanized Santa Ana River basin in Southern California. All assemblages exhibited strong differences between highly urbanized sites in the valley and the least-impacted sites at the transition between the valley and undeveloped mountains. Results within the urbanized area differed among taxa. Periphyton assemblages were dominated by diatoms (>75% of total taxa). Periphyton assemblages within the urbanized area were not associated with any of the measured environmental variables, suggesting that structure of urban periphyton assemblages might...
We documented species' distributions, size structure of populations, abundance in mainstem and tributary streams, habitat use, and diets of prickly sculpin, Cottus asper, and coastrange sculpin, C. aleuticus, in the Eel River drainage of California, to determine the processes allowing coexistence of these very similar fishes. We observed prickly sculpins at 43 sites and coastrange sculpins at 34. The species co-occurred at 26 sites. Young-of-year coastrange sculpins were only observed within 42 km of the ocean, but young-of-year prickly sculpins were present throughout the species range. Mean, maximum, and minimum lengths of coastrange sculpins were positively correlated with distance from the ocean but no significant...
Four studies were done in the upper Merced River drainage in Yosemite National Park and nearby areas from 1993 to 1996. First, monitoring studies of benthic algae, benthic invertebrates, fish, and habitat were undertaken at sites near Happy Isles and Pohono bridges from 1993 to 1995 as part of the National Water-Quality Assessment Program of the U.S. Geological Survey. Second, an ecological survey of benthic algae, benthic invertebrates, fish, and habitat was done in the upper Merced River drainage in 1994. Third, a special study of benthic algae, habitat, and water quality was done in the reach of the Merced River within Yosemite Valley to deter-mine whether human activities were having measurable effects on the...
Data were collected in the San Joaquin and Sacramento river drainages to evaluate associations between macroinvertebrate assemblages and environmental variables as part of the National Water-Quality Assessment Program of the U.S. Geological Survey. Samples were collected at 53 sites from 1993 to 1995 in the San Joaquin River drainage and in 1996 and 1997 in the Sacramento River drainage. Macroinvertebrates were collected from riffles or from large woody debris (snags) when riffles were absent. Macroinvertebrate taxa were aggregated to the family (or higher) level of taxonomic organization, resulting in 81 taxa for analyses. Only the 50 most common taxa were used for two-way indicator species analysis (TWINSPAN)...
Samples of resident biota and bed sediments were collected in 1992 from 18 sites on or near the floor of the San Joaquin Valley, California, for analysis of 33 organochlorine compounds. The sites were divided into five groups on the basis of physiographic region and land use. Ten compounds were detected in tissue, and 16 compounds were detected in bed sediment. The most frequently detected compound in both media was p,p'-DDE. Concentrations of total DDT (sum of o,p'- and p,p'-forms of DDD, DDE, and DDT) were statistically different among groups of sites for tissue and sediment (Kruskal-Wallis, P < 0.05). Concentrations in both media were highest in streams draining the west side of the valley. Concentrations of...
We examined associations of fish assemblages and fish traits with urbanization and selected environmental variables in nine major United States metropolitan areas. The strongest relations between fishes and urbanization occurred in the metropolitan areas of Atlanta, Georgia; Birmingham, Alabama; Boston, Massachusetts; and Portland, Oregon. In these areas, environmental variables with strong associations (rs ≥ 0.70) with fish assemblages and fish traits tended to have strong associations with urbanization. Relations of urbanization with fish assemblages and fish traits were weaker in Denver, Colorado; Dallas-Fort Worth, Texas; Milwaukee-Green Bay, Wisconsin; and Raleigh, North Carolina. Environmental variables associated...
Changes in the position of the low salinity zone, a habitat suitability index, turbidity, and water temperature modeled from four 100-year scenarios of climate change were evaluated for possible effects on delta smelt Hypomesus transpacificus, which is endemic to the Sacramento–San Joaquin Delta. The persistence of delta smelt in much of its current habitat into the next century appears uncertain. By mid-century, the position of the low salinity zone in the fall and the habitat suitability index converged on values only observed during the worst droughts of the baseline period (1969–2000). Projected higher water temperatures would render waters historically inhabited by delta smelt near the confluence of the Sacramento...
The effects of agriculture, particularly from the use of pesticides, on aquatic ecosystems in the San Joaquin River Basin concern many aquatic resource managers, water quality managers, and water users. A total of five sites were sampled once in June 2001 and once in September 2001 to document the periphyton (attached algae) community, the benthic macroinvertebrate (insects and non-insects) community, and stream habitat conditions. The purposes of the study were to document existing conditions and, to the extent possible, relate the periphyton and macroinvertebrate community condition to environmental conditions. A total of 161 taxa of algae were collected during the study. Samples from the richest targeted habitat,...
This chapter describes a general model of food webs within tidal wetlands and represents how physical features of the wetland affect the structure and function of the food web. This conceptual model focuses on how the food web provides support for (or may reduce support for) threatened fish species. This model is part of a suite of conceptual models designed to guide monitoring of restoration sites throughout the San Francisco Estuary (SFE), but particularly within the Sacramento-San Joaquin Delta (Delta) and Suisun Marsh. The conceptual models have been developed based on the Delta Regional Ecosystem Restoration Implementation Plan (DRERIP) models, and are designed to aid in the identification and evaluation of...
This report presents the results of a reconnaissance study conducted by the U.S. Geological Survey (USGS) to determine mercury (Hg) and other selected metal concentrations in Black bass (Micropterus spp.) from Whiskeytown Lake, Shasta County, California. Total mercury concentrations were determined by cold-vapor atomic absorption spectroscopy (CVAAS) in fillets and whole bodies of each sampled fish. Selected metals scans were performed on whole bodies (less the fillets) by inductively coupled plasma–mass spectroscopy (ICP-MS) and inductively coupled plasma–optical emission spectroscopy (ICP-OES). Mercury concentrations in fillet samples ranged from 0.06 to 0.52 micrograms per gram (μg/g) wet weight (ww). Total mercury...
Changes in water temperatures caused by climate change in California's Sacramento–San Joaquin Delta will affect the ecosystem through physiological rates of fishes and invertebrates. This study presents statistical models that can be used to forecast water temperature within the Delta as a response to atmospheric conditions. The daily average model performed well (R2 values greater than 0.93 during verification periods) for all stations within the Delta and San Francisco Bay provided there was at least 1 year of calibration data. To provide long-term projections of Delta water temperature, we forced the model with downscaled data from climate scenarios. Based on these projections, the ecological implications for...
The Santa Ana River basin is the largest stream system in Southern California and includes a densely populated coastal area. Extensive urbanization has altered the geomorphology and hydrology of the streams, adversely affecting aquatic communities. We studied macroinvertebrate and periphyton assemblages in relation to two categorical features of the highly engineered hydrologic system-water source and channel type. Four water sources were identified-natural, urban-impacted groundwater, urban runoff, and treated wastewater. Three channel types were identified-natural, channelized with natural bottom, and concrete-lined. Nineteen sites, covering the range of these two categorical features, were sampled in summer 2000....
Concentrations, loads, and sources of nitrate and total phosphorus were investigated at the Panjiakou and Daheiting Reservoir system in northern Hebei Province, People's Republic of China. The Luan He River is the primary source of water to these reservoirs, and the upstream watershed has a mix of land uses including agriculture, forest, and one large urban center. The reservoirs have a primary use for storage of drinking water and partially supply Tianjin City with its annual needs. Secondary uses include flood control and aqua culture (fish cages). The response of the reservoir system from phosphorus input, with respect to chlorophyll-a production from algae, was fitted to a model of normalized phosphorus loading...
Human effects on estuaries are often associated with major decreases in abundance of aquatic species. However, remediation priorities are difficult to identify when declines result from multiple stressors with interacting sublethal effects. The San Francisco Estuary offers a useful case study of the potential role of contaminants in declines of organisms because the waters of its delta chronically violate legal water quality standards; however, direct effects of contaminants on fish species are rarely observed. Lack of direct lethality in the field has prevented consensus that contaminants may be one of the major drivers of coincident but unexplained declines of fishes with differing life histories and habitats...
Alteration of natural flow regimes is generally acknowledged to have negative effects on native biota; however, methods for defining ecologically appropriate flow regimes in managed river systems are only beginning to be developed. Understanding how past and present water management has affected rivers is an important part of developing such tools. In this paper, we evaluate how existing hydrologic infrastructure and management affect streamflow characteristics of rivers in the Central Valley, California and discuss those characteristics in the context of habitat requirements of native and alien fishes. We evaluated the effects of water management by comparing observed discharges with estimated discharges assuming...
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